Systematic analysis of negative and positive feedback loops for robustness and temperature compensation in circadian rhythms

Temperature compensation and robustness to biological noise are two key characteristics of the circadian clock. These features allow the circadian pacemaker to maintain a steady oscillation in a wide range of environmental conditions. The presence of a time-delayed negative feedback loop in the regu...

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Bibliographic Details
Main Authors: Chakravarty Suchana
Hong Christian I.
Csikász-Nagy Attila
Format: Article
Published: 2023
Series:NPJ SYSTEMS BIOLOGY AND APPLICATIONS 9 No. 1
Subjects:
mtmt:33639332
Online Access:https://publikacio.ppke.hu/1706

MARC

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245 1 0 |a Systematic analysis of negative and positive feedback loops for robustness and temperature compensation in circadian rhythms  |h [elektronikus dokumentum] /  |c  Chakravarty Suchana 
260 |c 2023 
490 0 |a NPJ SYSTEMS BIOLOGY AND APPLICATIONS  |v 9 No. 1 
520 3 |a Temperature compensation and robustness to biological noise are two key characteristics of the circadian clock. These features allow the circadian pacemaker to maintain a steady oscillation in a wide range of environmental conditions. The presence of a time-delayed negative feedback loop in the regulatory network generates autonomous circadian oscillations in eukaryotic systems. In comparison, the circadian clock of cyanobacteria is controlled by a strong positive feedback loop. Positive feedback loops with substrate depletion can also generate oscillations, inspiring other circadian clock models. What makes a circadian oscillatory network robust to extrinsic noise is unclear. We investigated four basic circadian oscillators with negative, positive, and combinations of positive and negative feedback loops to explore network features necessary for circadian clock resilience. We discovered that the negative feedback loop system performs the best in compensating temperature changes. We also show that a positive feedback loop can reduce extrinsic noise in periods of circadian oscillators, while intrinsic noise is reduced by negative feedback loops. 
650 4 |a Biokémia és molekuláris biológia 
650 4 |a Genetika és örökléstan 
650 4 |a Farmakológia és gyógyszerészet 
700 0 1 |a Hong Christian I.  |e aut 
700 0 2 |a Csikász-Nagy Attila  |e aut 
856 4 0 |u https://publikacio.ppke.hu/id/eprint/1706/1/npj2023.pdf  |z Dokumentum-elérés